STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ptlEType IV secretion system, component VirB8 (335 aa)    
Predicted Functional Partners:
ptlF
VirB9 protein; Type IV secretory pathway, VirB9 components
   
 0.990
virB11
VirB11 protein; Type IV secretory pathway, VirB11 components,and related ATPases involved in archaeal flagella biosynthesis
   
 0.987
virB10
Type IV secretion system putative channel component VirB4; Type IV secretory pathway, VirB10 components
 
   
 0.986
virB1
Type IV secretion system lytic murein transglycosylase component VirB1; Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains)
 
   
 0.955
ptlB
VirB3 protein; Type IV secretory pathway, VirB3 components
 
   
 0.940
CAP51033.1
annotation not available
 
   
 0.920
virB4
VirB4 protein; Type IV secretory pathway, VirB4 components
   
 0.899
virD4
VirD4 protein; Type IV secretory pathway, VirD4 components
   
 0.873
CAP51041.1
Type IV secretory pathway, VirB4 components
   
 0.873
virB6_1
VirB6-like membrane protein; Type IV secretory pathway, VirB6 components
 
   
 0.860
Your Current Organism:
Xanthomonas campestris campestris
NCBI taxonomy Id: 340
Other names: X. campestris pv. campestris, Xanthomonas campestris, Xanthomonas campestris (pv. campestris), Xanthomonas campestris campestris, Xanthomonas campestris pv. campestris
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