STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gumOGumO; 3-oxoacyl-[acyl-carrier-protein] synthase III (435 aa)    
Predicted Functional Partners:
gumP
GumP protein; Zn-dependent hydrolases, including glyoxylases
 
  
 0.973
fabD
(acyl-carrier-protein) S-malonyltransferase
  
 0.925
XCC2436
Uncharacterized protein
 
     0.909
alg2
Glycosyltransferase; Glycosyl transferases, related to UDP-glucuronosyltransferase
 
    0.895
XCC2438
NAD(P)H steroid dehydrogenase; Nucleoside-diphosphate-sugar epimerases
 
    0.891
ugcG
Uncharacterized protein; Glycosyltransferases, probably involved in cell wall biogenesis
 
     0.871
fabZ
3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ; Involved in unsaturated fatty acids biosynthesis. Catalyzes the dehydration of short chain beta-hydroxyacyl-ACPs and long chain saturated and unsaturated beta-hydroxyacyl-ACPs
 
  
 0.863
fabF1
3-oxoacyl-[acyl-carrier-protein] synthase 2; Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP
 
  
 0.854
gumN
Uncharacterized protein conserved in bacteria
     
 0.850
acpP1
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis; Belongs to the acyl carrier protein (ACP) family
 
 
 0.820
Your Current Organism:
Xanthomonas campestris campestris
NCBI taxonomy Id: 340
Other names: X. campestris pv. campestris, Xanthomonas campestris, Xanthomonas campestris (pv. campestris), Xanthomonas campestris campestris, Xanthomonas campestris pv. campestris
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