STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XCC2385Outer membrane receptor proteins mostly Fe transport (853 aa)    
Predicted Functional Partners:
phy
Uncharacterized protein; 3-phytase (myo-inositol-hexaphosphate 3-phosphohydrolase)
 
     0.889
XCC2383
Uncharacterized protein; Predicted phosphohydrolases
 
     0.877
mopB
Outer membrane protein and related peptidoglycan-associated (lipo)proteins; Belongs to the ompA family
      
 0.643
XCC1169
annotation not available
  
     0.603
cvpA
Uncharacterized membrane protein required for colicin V production
      
 0.603
upp
Uracil phosphoribosyltransferase; Catalyzes the conversion of uracil and 5-phospho-alpha- D-ribose 1-diphosphate (PRPP) to UMP and diphosphate
       0.568
XCC1773
Uncharacterized protein conserved in bacteria
  
     0.552
XCC3405
Outer membrane receptor proteins mostly Fe transport
 
  
 0.533
fhuA3
Outer membrane receptor proteins mostly Fe transport
  
  
 0.517
fpvA1
Outer membrane receptor for monomeric catechols
  
  
 0.512
Your Current Organism:
Xanthomonas campestris campestris
NCBI taxonomy Id: 340
Other names: X. campestris pv. campestris, Xanthomonas campestris, Xanthomonas campestris (pv. campestris), Xanthomonas campestris campestris, Xanthomonas campestris pv. campestris
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