STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
potFPutrescine-binding periplasmic protein; Required for the activity of the bacterial periplasmic transport system of putrescine (371 aa)    
Predicted Functional Partners:
potI
ABC-type spermidine/putrescine transport system permease component II
 
 0.999
potH
Polyamine transport protein; ABC-type spermidine/putrescine transport system permease component I
 
 0.995
potA
Spermidine/putrescine import ATP-binding protein PotA; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system
 0.990
XCC2345
Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
 
   
 0.815
XCC2349
Uncharacterized protein; Glycine/D-amino acid oxidases (deaminating)
 
   
 0.611
XCC2347
Predicted glutamine amidotransferases
 
     0.532
glnA3
Glutamine synthetase
 
     0.521
gltB
Glutamate synthase, alpha subunit; Glutamate synthase domain 2
      
 0.519
rmrA
Membrane-fusion protein
     
 0.502
XCC2342
Transport protein; Permeases of the major facilitator superfamily
       0.499
Your Current Organism:
Xanthomonas campestris campestris
NCBI taxonomy Id: 340
Other names: X. campestris pv. campestris, Xanthomonas campestris, Xanthomonas campestris (pv. campestris), Xanthomonas campestris campestris, Xanthomonas campestris pv. campestris
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