STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rmrAMembrane-fusion protein (413 aa)    
Predicted Functional Partners:
XCC2342
Transport protein; Permeases of the major facilitator superfamily
 
  
 0.980
XCC2341
Outer membrane protein
 
 
 0.931
pmrB
Multidrug resistance membrane translocase; Permeases of the major facilitator superfamily
 
 
 0.808
oprN5
Outer membrane protein
 
 
 0.735
oprN4
Outer membrane protein
 
 
 0.602
raxC
Outer membrane protein
  
 
 0.576
potH
Polyamine transport protein; ABC-type spermidine/putrescine transport system permease component I
       0.568
potI
ABC-type spermidine/putrescine transport system permease component II
       0.568
potA
Spermidine/putrescine import ATP-binding protein PotA; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system
       0.566
oprN2
Outer membrane protein
 
 
 0.522
Your Current Organism:
Xanthomonas campestris campestris
NCBI taxonomy Id: 340
Other names: X. campestris pv. campestris, Xanthomonas campestris, Xanthomonas campestris (pv. campestris), Xanthomonas campestris campestris, Xanthomonas campestris pv. campestris
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