STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XCC2305annotation not available (627 aa)    
Predicted Functional Partners:
rnD
Ribonuclease D; Exonuclease involved in the 3' processing of various precursor tRNAs. Initiates hydrolysis at the 3'-terminus of an RNA molecule and releases 5'-mononucleotides; Belongs to the RNase D family
 
     0.732
cefD
Isopenicillin N epimerase; Selenocysteine lyase
  
  
 0.731
XCC2304
Virulence protein; Type IV secretory pathway VirJ component
       0.562
XCC2431
annotation not available
  
     0.543
ank2
Ankyrin-like protein; FOG: Ankyrin repeat
 
     0.538
waaL
Membrane protein; Lipid A core - O-antigen ligase and related enzymes
  
     0.491
XCC2250
annotation not available
  
     0.490
XCC2390
annotation not available
  
     0.459
XCC3899
annotation not available
  
     0.449
XCC2656
annotation not available
  
     0.448
Your Current Organism:
Xanthomonas campestris campestris
NCBI taxonomy Id: 340
Other names: X. campestris pv. campestris, Xanthomonas campestris, Xanthomonas campestris (pv. campestris), Xanthomonas campestris campestris, Xanthomonas campestris pv. campestris
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