STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XCC2275annotation not available (305 aa)    
Predicted Functional Partners:
XCC2274
GGDEF family protein; Predicted signal transduction protein containing a membrane domain an EAL and a GGDEF domain
 
   
 0.923
trmJ
tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ; Catalyzes the formation of 2'O-methylated cytidine (Cm32) or 2'O-methylated uridine (Um32) at position 32 in tRNA
      0.760
XCC1583
annotation not available
  
     0.659
XCC3758
annotation not available
  
     0.656
XCC1558
Uncharacterized protein
  
     0.645
oprP2
Phosphate-selective porin
 
    0.620
XCC2941
annotation not available
  
     0.555
XCC1427
annotation not available
  
     0.552
XCC0557
annotation not available
  
     0.517
XCC0694
annotation not available
  
     0.513
Your Current Organism:
Xanthomonas campestris campestris
NCBI taxonomy Id: 340
Other names: X. campestris pv. campestris, Xanthomonas campestris, Xanthomonas campestris (pv. campestris), Xanthomonas campestris campestris, Xanthomonas campestris pv. campestris
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