STRINGSTRING
pglA2 protein (Xanthomonas campestris campestris) - STRING interaction network
"pglA2" - Endopolygalacturonase in Xanthomonas campestris campestris
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pglA2Endopolygalacturonase; Belongs to the glycosyl hydrolase 28 family (556 aa)    
Predicted Functional Partners:
pme1
Pectinesterase; Pectin methylesterase (325 aa)
 
  0.986
pel3
Pectate lyase (377 aa)
 
   
  0.978
pel2
annotation not available (380 aa)
 
   
  0.977
pme2
Pectinesterase; Pectin methylesterase (401 aa)
 
  0.976
pel1
Pectate lyase (353 aa)
 
   
  0.961
uxaC
Glucuronate isomerase (471 aa)
       
  0.909
xylB5
Xylosidase; Hydrolyzes 1,4-beta-D-xylans to remove successive D-xylose residues from the non-reducing termini; Belongs to the glycosyl hydrolase 43 family (544 aa)
 
   
  0.893
pglA1
Endopolygalacturonase; Belongs to the glycosyl hydrolase 28 family (466 aa)
   
   
0.866
xylB4
Xylosidase/arabinosidase; Beta-xylosidase; Belongs to the glycosyl hydrolase 43 family (555 aa)
 
   
  0.840
xylB6
Xylosidase/arabinosidase; Hydrolyzes 1,4-beta-D-xylans to remove successive D-xylose residues from the non-reducing termini; Belongs to the glycosyl hydrolase 43 family (568 aa)
 
   
  0.839
Your Current Organism:
Xanthomonas campestris campestris
NCBI taxonomy Id: 340
Other names: X. campestris pv. campestris, Xanthomonas campestris, Xanthomonas campestris (pv. campestris), Xanthomonas campestris campestris, Xanthomonas campestris pv. campestris
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