STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
msbA3ABC transporter ATP-binding protein; ABC-type multidrug transport system, ATPase and permease components (558 aa)    
Predicted Functional Partners:
msbA2
ABC-type multidrug transport system, ATPase and permease components
 
0.990
cydB2
Cytochrome bd-type quinol oxidase subunit 2
 
 
 
 0.849
cydA2
Cytochrome bd-type quinol oxidase subunit 1
 
 
 
 0.796
XCC3589
annotation not available
  
     0.539
XCC0546
annotation not available
  
     0.537
XCC1169
annotation not available
  
     0.503
XCC2234
Uncharacterized protein; Related to cytochrome d oxidase
       0.441
XCC1773
Uncharacterized protein conserved in bacteria
 
     0.434
XCC0155
annotation not available
  
     0.428
Your Current Organism:
Xanthomonas campestris campestris
NCBI taxonomy Id: 340
Other names: X. campestris pv. campestris, Xanthomonas campestris, Xanthomonas campestris (pv. campestris), Xanthomonas campestris campestris, Xanthomonas campestris pv. campestris
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