STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XCC2217Hydrolase; Predicted amidohydrolase (266 aa)    
Predicted Functional Partners:
gltB
Glutamate synthase, alpha subunit; Glutamate synthase domain 2
    
 0.942
gltD
NADPH-dependent glutamate synthase beta chain and related oxidoreductases
    
  0.901
XCC2365
Unnamed protein product
     
  0.900
mdh
Malate dehydrogenase; Catalyzes the reversible oxidation of malate to oxaloacetate
   
 0.828
aspC2
Succinyldiaminopimelate transaminase; Aspartate/tyrosine/aromatic aminotransferase
  
 0.818
gltA
Citrate synthase; Belongs to the citrate synthase family
     
 0.800
sucA
2-oxoglutarate dehydrogenase complex,dehydrogenase (E1) component, and related enzymes
     
  0.800
icd1
Isocitrate/isopropylmalate dehydrogenase
     
  0.800
icd2
Monomeric isocitrate dehydrogenase
     
  0.800
der
GTPase Der; GTPase that plays an essential role in the late steps of ribosome biogenesis
  
  
 0.410
Your Current Organism:
Xanthomonas campestris campestris
NCBI taxonomy Id: 340
Other names: X. campestris pv. campestris, Xanthomonas campestris, Xanthomonas campestris (pv. campestris), Xanthomonas campestris campestris, Xanthomonas campestris pv. campestris
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