STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XCC2199Beta-alanine synthetase; Predicted amidohydrolase (294 aa)    
Predicted Functional Partners:
XCC2198
Uncharacterized protein; Peptidylarginine deiminase and related enzymes; Belongs to the agmatine deiminase family
  
 0.993
speE
Polyamine aminopropyltransferase; Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy- AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine
   
 0.977
XCC1548
Transferase; Spermidine synthase
    
 0.903
XCC2345
Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
     
 0.902
pat
Phosphinothricin N-acetyltransferase; Sortase and related acyltransferases
  
    0.899
traB
Uncharacterized homolog of PrgY (pheromone shutdown protein)
       0.898
speA
Biosynthetic arginine decarboxylase; Catalyzes the biosynthesis of agmatine from arginine; Belongs to the Orn/Lys/Arg decarboxylase class-II family. SpeA subfamily
 
   
 0.786
XCC2197
annotation not available
       0.583
gltB
Glutamate synthase, alpha subunit; Glutamate synthase domain 2
     
 0.447
Your Current Organism:
Xanthomonas campestris campestris
NCBI taxonomy Id: 340
Other names: X. campestris pv. campestris, Xanthomonas campestris, Xanthomonas campestris (pv. campestris), Xanthomonas campestris campestris, Xanthomonas campestris pv. campestris
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