STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XCC2192annotation not available (101 aa)    
Predicted Functional Partners:
rfb303
Lipopolysaccharide core biosynthesis protein; UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N- acetylglucosamine-1-phosphate transferase
 
     0.911
lapB
Lipopolysaccharide assembly protein B; Modulates cellular lipopolysaccharide (LPS) levels by regulating LpxC, which is involved in lipid A biosynthesis. May act by modulating the proteolytic activity of FtsH towards LpxC. May also coordinate assembly of proteins involved in LPS synthesis at the plasma membrane
       0.898
XCC2189
Epimerase/dehydratase protein; Predicted nucleoside-diphosphate sugar epimerases
       0.837
galU
UTP--glucose-1-phosphate uridylyltransferase; UDP-glucose pyrophosphorylase
       0.818
XCC2715
annotation not available
  
     0.784
XCC0274
annotation not available
  
     0.783
XCC2762
annotation not available
  
     0.783
XCC2621
annotation not available
  
     0.783
XCC2267
annotation not available
  
     0.783
uptD
Outer membrane protein; F0F1-type ATP synthase b subunit
  
     0.783
Your Current Organism:
Xanthomonas campestris campestris
NCBI taxonomy Id: 340
Other names: X. campestris pv. campestris, Xanthomonas campestris, Xanthomonas campestris (pv. campestris), Xanthomonas campestris campestris, Xanthomonas campestris pv. campestris
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