STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XCC2178Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain (155 aa)    
Predicted Functional Partners:
XCC2176
Predicted membrane protein
     
 0.899
XCC2177
Hydrolase; Amidases related to nicotinamidase
       0.898
XCC2175
Uncharacterized protein; Predicted metal-dependent hydrolase with the TIM-barrel fold
       0.706
XCC2179
Two-component system sensor protein; Predicted periplasmic ligand-binding sensor domain
 
 
   0.683
XCC2180
Two-component system regulatory protein; Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain
 
     0.676
XCC3317
Transcriptional regulator; FOG: WD40 repeat
 
 
 
 0.549
adpA
Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain
 
 
 
 0.505
XCC1108
Transcriptional regulator araC/xylS family; AraC-type DNA-binding domain-containing proteins
  
     0.501
rpoA
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
    
 
 0.484
XCC3056
Transcriptional regulator araC family; AraC-type DNA-binding domain-containing proteins
 
     0.460
Your Current Organism:
Xanthomonas campestris campestris
NCBI taxonomy Id: 340
Other names: X. campestris pv. campestris, Xanthomonas campestris, Xanthomonas campestris (pv. campestris), Xanthomonas campestris campestris, Xanthomonas campestris pv. campestris
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