STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mntHDivalent metal cation transporter MntH; H(+)-stimulated, divalent metal cation uptake system (444 aa)    
Predicted Functional Partners:
XCC2170
Iron dependent repressor; Mn-dependent transcriptional regulator
 
   
 0.942
zupT
Zinc transporter ZupT; Mediates zinc uptake. May also transport other divalent cations
  
  
 0.832
mntP
Putative manganese efflux pump MntP; Probably functions as a manganese efflux pump
      
 0.751
dnaJ2
Curved DNA binding protein; DnaJ-class molecular chaperone with C-terminal Zn finger domain
  
  
 0.625
tadA
tRNA-specific adenosine deaminase; Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2); Belongs to the cytidine and deoxycytidylate deaminase family
  
    0.589
mccA
Biotin carboxylase; Leucine degradation
  
    0.567
XCC0088
annotation not available
  
  
 0.492
feoB
Fe2+ transport system protein B
   
  
 0.491
orn
Oligoribonuclease; 3'-to-5' exoribonuclease specific for small oligoribonucleotides
       0.487
era
GTPase Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism
     
 0.484
Your Current Organism:
Xanthomonas campestris campestris
NCBI taxonomy Id: 340
Other names: X. campestris pv. campestris, Xanthomonas campestris, Xanthomonas campestris (pv. campestris), Xanthomonas campestris campestris, Xanthomonas campestris pv. campestris
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