STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
phbCPoly (3-hydroxybutyric acid) synthase; Unnamed protein product (358 aa)    
Predicted Functional Partners:
XCC2294
Acetoacetyl-CoA reductase; Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases); Belongs to the short-chain dehydrogenases/reductases (SDR) family
 
  
 0.982
phbB
Acetoacetyl-coA reductase; Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)
    
 0.976
XCC2160
annotation not available
 
   
 0.975
phaZ
PHB depolymerase; Poly-beta-hydroxyalkanoate depolymerase
 
  
 0.956
fadB3
Enoyl-CoA hydratase/carnithine racemase; 3-hydroxyacyl-CoA dehydrogenase
     
 0.919
hbdH1
Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)
     
 0.717
maeB
Malic enzyme
 
   
 0.689
pssA1
CDP-diacylglycerol-serine o-phosphatidyltransferase; Phosphatidylserine synthase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family
       0.660
XCC2295
Uncharacterized protein conserved in bacteria
 
   
 0.631
XCC2157
annotation not available
       0.608
Your Current Organism:
Xanthomonas campestris campestris
NCBI taxonomy Id: 340
Other names: X. campestris pv. campestris, Xanthomonas campestris, Xanthomonas campestris (pv. campestris), Xanthomonas campestris campestris, Xanthomonas campestris pv. campestris
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