STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fadB13-hydroxyacyl-CoA dehydrogenase type II; Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) (256 aa)    
Predicted Functional Partners:
mvaB
Hydroxymethylglutaryl-CoA lyase; Isopropylmalate/homocitrate/citramalate synthases
 
   
 0.787
XCC1830
Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A)
  
    0.725
XCC1833
Enoyl-CoA hydratase/carnithine racemase
 
   0.708
fabF1
3-oxoacyl-[acyl-carrier-protein] synthase 2; Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP
 
 
 0.657
fabB
3-oxoacyl-(acyl-carrier-protein) synthase; Belongs to the beta-ketoacyl-ACP synthases family
 
 
 0.631
fabD
(acyl-carrier-protein) S-malonyltransferase
  
 0.600
purH
Bifunctional purine biosynthesis protein PurH; AICAR transformylase/IMP cyclohydrolase PurH (only IMP cyclohydrolase domain in Aful)
 
  
 
 0.589
XCC1829
annotation not available
       0.574
mccB
Acyl-CoA carboxyltransferase beta chain; Leucine degradation
 
     0.572
mccA
Biotin carboxylase; Leucine degradation
 
  
 0.566
Your Current Organism:
Xanthomonas campestris campestris
NCBI taxonomy Id: 340
Other names: X. campestris pv. campestris, Xanthomonas campestris, Xanthomonas campestris (pv. campestris), Xanthomonas campestris campestris, Xanthomonas campestris pv. campestris
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