STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XCC1833Enoyl-CoA hydratase/carnithine racemase (265 aa)    
Predicted Functional Partners:
mvaB
Hydroxymethylglutaryl-CoA lyase; Isopropylmalate/homocitrate/citramalate synthases
 
 0.991
mccB
Acyl-CoA carboxyltransferase beta chain; Leucine degradation
 
 0.970
mccA
Biotin carboxylase; Leucine degradation
 0.964
fadA3
Acetoacetyl-CoA thiolase; Acetyl-CoA acetyltransferase; Belongs to the thiolase family
 
 0.874
ivd
Acyl-CoA dehydrogenase; Leucine degradation
 
 
 0.796
rpfF
RpfF protein; Enoyl-CoA hydratase/carnithine racemase
  
   
 0.749
fadE3
Acyl-CoA dehydrogenases
 
 
 0.736
feoB
Fe2+ transport system protein B
       0.716
fadB1
3-hydroxyacyl-CoA dehydrogenase type II; Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)
 
   0.708
fadE4
Acyl-CoA dehydrogenases
 
 
 0.694
Your Current Organism:
Xanthomonas campestris campestris
NCBI taxonomy Id: 340
Other names: X. campestris pv. campestris, Xanthomonas campestris, Xanthomonas campestris (pv. campestris), Xanthomonas campestris campestris, Xanthomonas campestris pv. campestris
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