STRINGSTRING
recJ protein (Xanthomonas campestris campestris) - STRING interaction network
"recJ" - Single-stranded DNA-specific exonuclease in Xanthomonas campestris campestris
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
recJSingle-stranded DNA-specific exonuclease (579 aa)    
Predicted Functional Partners:
greA
Transcription elongation factor GreA; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3’terminus. GreA releases sequences of 2 to 3 nucleotides (158 aa)
 
   
  0.966
rpfE
Uncharacterized protein conserved in bacteria (306 aa)
         
  0.945
carB
Carbamoylphosphate synthase large subunit (split gene in MJ) (1080 aa)
         
  0.910
mpl
UDP-N-acetylmuramate--L-alanyl-gamma-D-glutamyl-meso-2,6-diaminoheptandioate ligase; Reutilizes the intact tripeptide L-alanyl-gamma-D- glutamyl-meso-diaminopimelate by linking it to UDP-N- acetylmuramate; Belongs to the MurCDEF family. Mpl subfamily (452 aa)
 
  0.823
recQ
Superfamily II DNA helicase (600 aa)
 
   
  0.817
dsbC
Thiol-disulfide interchange protein; Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process (264 aa)
 
        0.808
alaS
Alanine--tRNA ligase; Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction- alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain (882 aa)
 
   
  0.798
comA
DNA uptake/competence protein; Predicted membrane metal-binding protein (796 aa)
 
     
  0.792
lysU
Lysine--tRNA ligase; Lysyl-tRNA synthetase class II; Belongs to the class-II aminoacyl-tRNA synthetase family (505 aa)
            0.791
cysQ
Sulfite synthesis pathway protein; 3-Phosphoadenosine 5-phosphosulfate (PAPS) 3-phosphatase (261 aa)
     
   
  0.781
Your Current Organism:
Xanthomonas campestris campestris
NCBI taxonomy Id: 340
Other names: X. campestris pv. campestris, Xanthomonas campestris, Xanthomonas campestris (pv. campestris), Xanthomonas campestris campestris, Xanthomonas campestris pv. campestris
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