STRINGSTRING
rpfD protein (Xanthomonas campestris campestris) - STRING interaction network
"rpfD" - Regulatory protein in Xanthomonas campestris campestris
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rpfDRegulatory protein; Response regulator of the LytR/AlgR family (305 aa)    
Predicted Functional Partners:
XCC1849
annotation not available (281 aa)
 
          0.825
XCC1850
annotation not available (143 aa)
 
          0.779
XCC1848
annotation not available (454 aa)
 
          0.720
rpfI
annotation not available (342 aa)
         
  0.719
XCC2360
Signal transduction histidine kinase (1364 aa)
   
   
  0.656
greA
Transcription elongation factor GreA; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3’terminus. GreA releases sequences of 2 to 3 nucleotides (158 aa)
           
  0.583
recJ
Single-stranded DNA-specific exonuclease (579 aa)
           
  0.489
XCC3677
annotation not available (436 aa)
 
   
  0.488
xcsM
Type II secretory pathway, component PulM (150 aa)
           
  0.487
XCC2497
Oar protein; Outer membrane receptor proteins, mostly Fe transport (1081 aa)
   
          0.452
Your Current Organism:
Xanthomonas campestris campestris
NCBI taxonomy Id: 340
Other names: X. campestris pv. campestris, Xanthomonas campestris, Xanthomonas campestris (pv. campestris), Xanthomonas campestris campestris, Xanthomonas campestris pv. campestris
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