STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rpfBRpfB protein; Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II (560 aa)    
Predicted Functional Partners:
rpfC
Sensory/regulatory protein RpfC; Member of the two-component regulatory system RpfG/RpfC, which is required for full virulence and for formation and dispersal of biofilms. Involved in sensing and responding to the diffusible signaling factor (DSF), which is essential for cell- cell signaling. RpfC is probably a sensor of environmental signals, including DSF, which is autophosphorylated at a histidine residue in response to the signal. Then, probably activates RpfG via a four-step phosphorelay. May also negatively regulate the production of DSF, independently of RpfG (By similarity)
  
 
 0.946
rpfF
RpfF protein; Enoyl-CoA hydratase/carnithine racemase
  
 
 0.879
aas
2-acylglycerophosphoethanolamine acyltransferase; Permeases of the major facilitator superfamily
  
 
 0.828
rpfG
Response regulator containing a CheY-like receiver domain and an HD-GYP domain
      
 0.719
plsC4
1-acyl-sn-glycerol-3-phosphate acyltransferase; Belongs to the 1-acyl-sn-glycerol-3-phosphate acyltransferase family
  
 
 0.675
XCC1833
Enoyl-CoA hydratase/carnithine racemase
 
 
 0.661
rpfA
Aconitate hydratase; Catalyzes the isomerization of citrate to isocitrate via cis-aconitate
   
 
 0.650
rpfH
RpfH protein; Signal transduction histidine kinase
   
  
 0.613
ech2
Enoyl-CoA hydratase/carnithine racemase
  
 
 0.611
ech3
Enoyl-CoA hydratase/carnithine racemase; Belongs to the enoyl-CoA hydratase/isomerase family
 
 
 0.609
Your Current Organism:
Xanthomonas campestris campestris
NCBI taxonomy Id: 340
Other names: X. campestris pv. campestris, Xanthomonas campestris, Xanthomonas campestris (pv. campestris), Xanthomonas campestris campestris, Xanthomonas campestris pv. campestris
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