STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rpfAAconitate hydratase; Catalyzes the isomerization of citrate to isocitrate via cis-aconitate (922 aa)    
Predicted Functional Partners:
gltA
Citrate synthase; Belongs to the citrate synthase family
 
 0.982
icd1
Isocitrate/isopropylmalate dehydrogenase
 
 0.957
acnB
Aconitate hydratase B; Aconitase B; Belongs to the aconitase/IPM isomerase family
  
 0.944
icd2
Monomeric isocitrate dehydrogenase
   
 0.925
aceA
Isocitrate lyase
   
 
 0.915
prpC
Citrate synthase; Belongs to the citrate synthase family
 
 
 0.863
fumB
Fumarate hydratase class I; Catalyzes the reversible hydration of fumarate to (S)- malate; Belongs to the class-I fumarase family
  
  
 0.663
ppsA
Phosphoenolpyruvate synthase; Catalyzes the phosphorylation of pyruvate to phosphoenolpyruvate; Belongs to the PEP-utilizing enzyme family
  
  
 0.661
gltB
Glutamate synthase, alpha subunit; Glutamate synthase domain 2
  
  
 0.650
rpfB
RpfB protein; Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II
   
 
 0.650
Your Current Organism:
Xanthomonas campestris campestris
NCBI taxonomy Id: 340
Other names: X. campestris pv. campestris, Xanthomonas campestris, Xanthomonas campestris (pv. campestris), Xanthomonas campestris campestris, Xanthomonas campestris pv. campestris
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