STRINGSTRING
vapC protein (Xanthomonas campestris campestris) - STRING interaction network
"vapC" - Ribonuclease VapC in Xanthomonas campestris campestris
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
vapCRibonuclease VapC; Toxic component of a toxin-antitoxin (TA) module. An RNase (135 aa)    
Predicted Functional Partners:
XCC1861
annotation not available (85 aa)
 
     
  0.976
ilvM
Acetolactate synthase (isozyme II) small (regulatory) subunit (85 aa)
   
          0.729
acnB
Aconitate hydratase B; Aconitase B; Belongs to the aconitase/IPM isomerase family (863 aa)
         
  0.722
XCC3958
annotation not available (150 aa)
   
          0.662
XCC2332
annotation not available (172 aa)
   
          0.635
XCC3899
annotation not available (120 aa)
   
          0.625
rpfA
Aconitate hydratase; Catalyzes the isomerization of citrate to isocitrate via cis-aconitate (922 aa)
         
  0.598
XCC2792
annotation not available (274 aa)
   
          0.588
XCC0007
Uncharacterized protein; FOG- TPR repeat (398 aa)
   
          0.585
XCC3154
annotation not available (91 aa)
   
          0.579
Your Current Organism:
Xanthomonas campestris campestris
NCBI taxonomy Id: 340
Other names: X. campestris pv. campestris, Xanthomonas campestris, Xanthomonas campestris (pv. campestris), Xanthomonas campestris campestris, Xanthomonas campestris pv. campestris
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