STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XCC1912GGDEF family protein; FOG: GGDEF domain (975 aa)    
Predicted Functional Partners:
XCC2360
Signal transduction histidine kinase
 
 
 
 0.848
XCC1958
C-di-GMP phosphodiesterase A; FOG: EAL domain
 
 
 
 0.793
XCC1777
Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain
 
 
 0.774
XCC1911
GGDEF family protein; Predicted signal transduction protein containing a membrane domain an EAL and a GGDEF domain
 
 
 
0.754
XCC2023
Predicted signal transduction protein containing sensor and EAL domains
 
 
 
 0.738
vieA
Response regulator; FOG: EAL domain
 
 
 
 0.707
XCC2153
Two-component system sensor protein; FOG: PAS/PAC domain
 
 
 
 0.668
XCC3877
Predicted signal transduction protein containing sensor and EAL domains
 
     0.643
avrBs2
Avirulence protein; Glycerophosphoryl diester phosphodiesterase,probable
  
     0.631
XCC1086
Uncharacterized protein; FOG: EAL domain
 
 
 
 0.608
Your Current Organism:
Xanthomonas campestris campestris
NCBI taxonomy Id: 340
Other names: X. campestris pv. campestris, Xanthomonas campestris, Xanthomonas campestris (pv. campestris), Xanthomonas campestris campestris, Xanthomonas campestris pv. campestris
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