STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XCC1934Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain (127 aa)    
Predicted Functional Partners:
fleQ
Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains
   
 
 0.902
rpoN2
RNA polymerase sigma-54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
     
 0.893
XCC2360
Signal transduction histidine kinase
   
 
 0.803
XCC2153
Two-component system sensor protein; FOG: PAS/PAC domain
 
 
 
 0.690
XCC1960
HrpX related protein; Signal transduction histidine kinase
 
 
 0.668
rpfC
Sensory/regulatory protein RpfC; Member of the two-component regulatory system RpfG/RpfC, which is required for full virulence and for formation and dispersal of biofilms. Involved in sensing and responding to the diffusible signaling factor (DSF), which is essential for cell- cell signaling. RpfC is probably a sensor of environmental signals, including DSF, which is autophosphorylated at a histidine residue in response to the signal. Then, probably activates RpfG via a four-step phosphorelay. May also negatively regulate the production of DSF, independently of RpfG (By similarity)
 
 
 
 0.649
XCC1127
Two-component system sensor protein; Signal transduction histidine kinase
 
 
 0.643
XCC0483
Two-component system sensor protein; Signal transduction histidine kinase
 
 
 
 0.624
XCC1936
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain
 
    
0.611
rbfC
O-antigen biosynthesis protein; Glycosyltransferases involved in cell wall biogenesis
     
 0.557
Your Current Organism:
Xanthomonas campestris campestris
NCBI taxonomy Id: 340
Other names: X. campestris pv. campestris, Xanthomonas campestris, Xanthomonas campestris (pv. campestris), Xanthomonas campestris campestris, Xanthomonas campestris pv. campestris
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