STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
psrATranscriptional regulator (210 aa)    
Predicted Functional Partners:
fadB2
3-hydroxyacyl-CoA dehydrogenase
     
 0.829
phS
Histidine kinase/response regulator hybrid protein; FOG: GAF domain
    
 
 0.678
XCC1984
Uncharacterized protein conserved in bacteria
       0.619
ptrA
Zinc protease; Predicted Zn-dependent peptidases
      
 0.609
ptrB
Protease II
      
 0.609
der
GTPase Der; GTPase that plays an essential role in the late steps of ribosome biogenesis
       0.555
ndk
Nucleoside diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate
       0.552
fadA2
3-ketoacyl-CoA thiolase; Acetyl-CoA acetyltransferase; Belongs to the thiolase family
     
 0.501
CAP51638.1
Tfp pilus assembly protein PilF
       0.495
rlmN
Dual-specificity RNA methyltransferase RlmN; Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs. m2A2503 modification seems to play a crucial role in the proofreading step occurring at the peptidyl transferase center and thus would serve to optimize ribosomal fidelity; Belongs to the radical SAM superfamily. RlmN family
       0.485
Your Current Organism:
Xanthomonas campestris campestris
NCBI taxonomy Id: 340
Other names: X. campestris pv. campestris, Xanthomonas campestris, Xanthomonas campestris (pv. campestris), Xanthomonas campestris campestris, Xanthomonas campestris pv. campestris
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