STRINGSTRING
cypC protein (Xanthomonas campestris campestris) - STRING interaction network
"cypC" - Fatty acid alpha hydroxylase in Xanthomonas campestris campestris
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Gene Fusion
Cooccurence
Coexpression
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Databases
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[Homology]
Score
cypCFatty acid alpha hydroxylase; Cytochrome P450 (476 aa)    
Predicted Functional Partners:
XCC1996
Glutathione-dependent formaldehyde dehydrogenase; Threonine dehydrogenase and related Zn-dependent dehydrogenases (389 aa)
 
          0.746
yxnA
Glucose 1-dehydrogenase homolog; Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases); Belongs to the short-chain dehydrogenases/reductases (SDR) family (292 aa)
 
     
  0.678
rho
Transcription termination factor Rho; Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho’s RNA-dependent ATPase activity, and release of the mRNA from the DNA template (623 aa)
           
  0.605
holA
DNA polymerase III delta subunit; Unnamed protein product (342 aa)
           
  0.601
tex
Transcriptional accessory protein (787 aa)
           
  0.585
entF
ATP-dependent serine activating enzyme; Non-ribosomal peptide synthetase modules and related proteins (1326 aa)
   
 
  0.558
XCC1995
annotation not available (181 aa)
              0.554
XCC1994
annotation not available (192 aa)
              0.554
surA
Chaperone SurA; Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation (463 aa)
       
 
  0.525
XCC0092
annotation not available (265 aa)
   
 
  0.495
Your Current Organism:
Xanthomonas campestris campestris
NCBI taxonomy Id: 340
Other names: X. campestris pv. campestris, Xanthomonas campestris, Xanthomonas campestris (pv. campestris), Xanthomonas campestris campestris, Xanthomonas campestris pv. campestris
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