STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XCC1994annotation not available (192 aa)    
Predicted Functional Partners:
XCC1995
annotation not available
 
     0.972
XCC1996
Glutathione-dependent formaldehyde dehydrogenase; Threonine dehydrogenase and related Zn-dependent dehydrogenases
 
     0.877
tcmJ
annotation not available
  
     0.601
cypC
Fatty acid alpha hydroxylase; Cytochrome P450
       0.554
XCC0573
annotation not available
  
     0.543
XCC2263
Uncharacterized protein; Zn-dependent hydrolases, including glyoxylases
  
     0.505
yxnA
Glucose 1-dehydrogenase homolog; Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases); Belongs to the short-chain dehydrogenases/reductases (SDR) family
 
     0.501
XCC1097
annotation not available
 
     0.490
XCC1997
annotation not available
 
     0.487
XCC3886
annotation not available
  
    0.474
Your Current Organism:
Xanthomonas campestris campestris
NCBI taxonomy Id: 340
Other names: X. campestris pv. campestris, Xanthomonas campestris, Xanthomonas campestris (pv. campestris), Xanthomonas campestris campestris, Xanthomonas campestris pv. campestris
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