STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nasFABC-type nitrate/sulfonate/bicarbonate transport systems periplasmic components (356 aa)    
Predicted Functional Partners:
nasT
Histidine kinase/response regulator hybrid protein; Response regulator with putative antiterminator output domain
 
  
 0.993
XCC2003
Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain)
     
 0.900
XCC2009
Nitrate reductase; Anaerobic dehydrogenases typically selenocysteine-containing; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family
 
  
 0.893
nasD
NAD(P)H-nitrite reductase; Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
 
  
 0.890
nasE
Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenases
 
     0.828
nasA
Nitrate/nitrite transporter
 
   
 0.803
XCC2010
Uroporphyrin-III C-methyltransferase; Uroporphyrinogen-III methylase
 
   
 0.786
nrtCD
ABC-type nitrate/sulfonate/bicarbonate transport system ATPase component
  
 0.700
XCC3071
ABC transporter ATP-binding subunit; ABC-type oligopeptide transport system, ATPase component
 
  
 0.694
cysG
Siroheme synthase; Uroporphyrinogen-III methylase; Belongs to the precorrin methyltransferase family
     
 0.652
Your Current Organism:
Xanthomonas campestris campestris
NCBI taxonomy Id: 340
Other names: X. campestris pv. campestris, Xanthomonas campestris, Xanthomonas campestris (pv. campestris), Xanthomonas campestris campestris, Xanthomonas campestris pv. campestris
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