STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nasDNAD(P)H-nitrite reductase; Belongs to the nitrite and sulfite reductase 4Fe-4S domain family (817 aa)    
Predicted Functional Partners:
nasE
Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenases
 
 0.998
nasA
Nitrate/nitrite transporter
 
 
 0.997
XCC2009
Nitrate reductase; Anaerobic dehydrogenases typically selenocysteine-containing; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family
 
 0.997
glnA1
Glutamine synthetase
    
 0.945
glnA2
Glutamine synthetase
    
 0.917
glnA3
Glutamine synthetase
    
 0.917
XCC2365
Unnamed protein product
    
 0.905
XCC1197
Dioxygenases related to 2-nitropropane dioxygenase
     
 0.902
nasF
ABC-type nitrate/sulfonate/bicarbonate transport systems periplasmic components
 
  
 0.890
nasT
Histidine kinase/response regulator hybrid protein; Response regulator with putative antiterminator output domain
 
   
 0.873
Your Current Organism:
Xanthomonas campestris campestris
NCBI taxonomy Id: 340
Other names: X. campestris pv. campestris, Xanthomonas campestris, Xanthomonas campestris (pv. campestris), Xanthomonas campestris campestris, Xanthomonas campestris pv. campestris
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