STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nasEFerredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenases (119 aa)    
Predicted Functional Partners:
nasD
NAD(P)H-nitrite reductase; Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
 
 0.998
nasA
Nitrate/nitrite transporter
 
 
 0.996
XCC2009
Nitrate reductase; Anaerobic dehydrogenases typically selenocysteine-containing; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family
 
  
 0.991
glnA1
Glutamine synthetase
   
 
 0.907
glnA2
Glutamine synthetase
   
 
 0.907
glnA3
Glutamine synthetase
   
 
 0.907
XCC2365
Unnamed protein product
     
  0.900
XCC1197
Dioxygenases related to 2-nitropropane dioxygenase
     
  0.900
XCC2010
Uroporphyrin-III C-methyltransferase; Uroporphyrinogen-III methylase
 
  
 0.862
XCC2003
Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain)
  
  
 0.847
Your Current Organism:
Xanthomonas campestris campestris
NCBI taxonomy Id: 340
Other names: X. campestris pv. campestris, Xanthomonas campestris, Xanthomonas campestris (pv. campestris), Xanthomonas campestris campestris, Xanthomonas campestris pv. campestris
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