STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XCC2012StrU protein; Predicted homoserine dehydrogenase (432 aa)    
Predicted Functional Partners:
XCC2014
Putative epimerase/dehydratase; Nucleoside-diphosphate-sugar epimerases
 
   
 0.968
XCC2015
Glucose-1-phosphate cytidylyltransferase; Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon)
 
   
 0.950
XCC2013
dTDP-4-dehydrorhamnose 3,5-epimerase; Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4- hexulose; Belongs to the dTDP-4-dehydrorhamnose 3,5-epimerase family
 
     0.918
XCC2016
Uncharacterized protein
 
     0.890
XCC2011
Exopolysaccharide biosynthesis protein; Predicted acyltransferase
 
     0.770
XCC2017
Uncharacterized protein; Predicted dehydrogenase
 
   
 0.583
XCC2018
annotation not available
 
     0.514
CAP52490.1
Serine/threonine protein phosphatase
  
     0.501
thrA
Bifunctional aspartokinase/homoserine dehydrogenase I; Aspartokinases
      
 0.497
CAP52491.1
Uncharacterized protein encoded in toxicity protection region of plasmid R478, contains von Willebrand factor (vWF) domain
  
     0.466
Your Current Organism:
Xanthomonas campestris campestris
NCBI taxonomy Id: 340
Other names: X. campestris pv. campestris, Xanthomonas campestris, Xanthomonas campestris (pv. campestris), Xanthomonas campestris campestris, Xanthomonas campestris pv. campestris
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