STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yapHannotation not available (3961 aa)    
Predicted Functional Partners:
xadA
Outer membrane protein; Autotransporter adhesin
 
   
 0.883
XCC3590
annotation not available
 
   
 0.800
fasD
Outer membrane usher protein FasD; P pilus assembly protein porin PapC
 
   
 0.756
XCC1902
annotation not available
 
   
 0.731
mopB
Outer membrane protein and related peptidoglycan-associated (lipo)proteins; Belongs to the ompA family
  
  
 0.717
XCC3715
annotation not available
  
     0.689
XCC1294
Sensor histidine kinase; FOG: GGDEF domain
     
 0.672
XCC4239
Polysaccharide deacetylase; Uncharacterized protein containing caspase domain
  
 
 0.665
XCC2025
Subtilisin-like serine proteases
 
   
0.657
XCC1336
annotation not available
  
     0.647
Your Current Organism:
Xanthomonas campestris campestris
NCBI taxonomy Id: 340
Other names: X. campestris pv. campestris, Xanthomonas campestris, Xanthomonas campestris (pv. campestris), Xanthomonas campestris campestris, Xanthomonas campestris pv. campestris
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