STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XCC2033Oxidoreductase; Predicted dehydrogenases and related proteins (345 aa)    
Predicted Functional Partners:
rnhA
Ribonuclease H; Endonuclease that specifically degrades the RNA of RNA- DNA hybrids
 
 
    0.734
galM
Aldose 1-epimerase; Converts alpha-aldose to the beta-anomer
 
  
 0.686
dgoK
2-keto-3-deoxy-galactonokinase
     
 0.615
galA1
Arabinogalactan endo-14-beta-galactosidase
  
   
 0.586
XCC4009
Dehydratase; 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratases
     
 0.586
galA2
Arabinogalactan endo-1,4-beta-galactosidase
  
   
 0.578
gltB
Glutamate synthase, alpha subunit; Glutamate synthase domain 2
   
  
 0.574
XCC1304
DnaK suppressor protein
     
 0.513
fdh
L-fucose dehydrogenase; Predicted oxidoreductases (related to aryl-alcohol dehydrogenases)
  
  
 0.490
gudP
Putative hexuronate transporter; Permeases of the major facilitator superfamily
    
   0.489
Your Current Organism:
Xanthomonas campestris campestris
NCBI taxonomy Id: 340
Other names: X. campestris pv. campestris, Xanthomonas campestris, Xanthomonas campestris (pv. campestris), Xanthomonas campestris campestris, Xanthomonas campestris pv. campestris
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