STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CAP51722.1Response regulator of the LytR/AlgR family (530 aa)    
Predicted Functional Partners:
CAP51721.1
Response regulator of the LytR/AlgR family
 
  
 0.968
CAP51724.1
No COG number
 
     0.858
CAP51723.1
No funccat
 
     0.711
XCC3677
annotation not available
  
     0.540
algZ
Two-component system sensor protein; Predicted signal transduction protein with a C-terminal ATPase domain
  
     0.524
XCC2360
Signal transduction histidine kinase
  
  
 0.479
XCC3676
Transcriptional regulator protein; Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
 
  
 0.471
CAP51016.1
Predicted signal transduction protein with a C-terminal ATPase domain
  
     0.455
Your Current Organism:
Xanthomonas campestris campestris
NCBI taxonomy Id: 340
Other names: X. campestris pv. campestris, Xanthomonas campestris, Xanthomonas campestris (pv. campestris), Xanthomonas campestris campestris, Xanthomonas campestris pv. campestris
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