STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CAP51726.1Exported endopeptidase (283 aa)    
Predicted Functional Partners:
XCC0131
annotation not available
  
     0.735
CAP52188.1
N-acetylmuramoyl-L-alanine amidase
  
     0.641
XCC1138
annotation not available
  
     0.632
XCC3284
annotation not available
  
     0.631
CAP51725.1
annotation not available
       0.613
XCC1308
Uncharacterized protein
  
     0.578
CAP51724.1
No COG number
  
   
 0.574
CAP49830.1
Uncharacterized conserved protein
  
     0.563
nucA
DNA/RNA endonuclease G NUC1
  
     0.562
XCC1389
Uncharacterized protein; FOG: TPR repeat, SEL1 subfamily
  
 
   0.537
Your Current Organism:
Xanthomonas campestris campestris
NCBI taxonomy Id: 340
Other names: X. campestris pv. campestris, Xanthomonas campestris, Xanthomonas campestris (pv. campestris), Xanthomonas campestris campestris, Xanthomonas campestris pv. campestris
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