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rne protein (Xanthomonas campestris campestris) - STRING interaction network
"rne" - Ribonuclease E in Xanthomonas campestris campestris
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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rneRibonuclease E; Endoribonuclease that plays a central role in RNA processing and decay. Required for the maturation of 5S and 16S rRNAs and the majority of tRNAs. Also involved in the degradation of most mRNAs; Belongs to the RNase E/G family. RNase E subfamily (1194 aa)    
Predicted Functional Partners:
pnp
Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3’- to 5’-direction (735 aa)
 
 
  0.964
eno1
Enolase; Catalyzes the reversible conversion of 2- phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis (430 aa)
       
 
  0.931
pcnB
Poly(A) polymerase I; Adds poly(A) tail to the 3’ end of many RNAs, which usually targets these RNAs for decay. Plays a significant role in the global control of gene expression, through influencing the rate of transcript degradation, and in the general RNA quality control (455 aa)
 
 
  0.789
rpoH
DNA-directed RNA polymerase sigma subunit (sigma70/sigma32) (291 aa)
   
 
  0.785
minD
Site-determining protein; Septum formation inhibitor-activating ATPase; Belongs to the ParA family (269 aa)
     
      0.711
gnl3
Gluconolactonase (345 aa)
           
  0.704
gnl2
Gluconolactonase (300 aa)
           
  0.704
gnl1
Gluconolactonase (305 aa)
           
  0.704
orn
Oligoribonuclease; 3’-to-5’ exoribonuclease specific for small oligoribonucleotides (194 aa)
   
     
  0.699
hfq
RNA-binding protein Hfq; RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs (92 aa)
 
 
 
  0.661
Your Current Organism:
Xanthomonas campestris campestris
NCBI taxonomy Id: 340
Other names: X. campestris pv. campestris, Xanthomonas campestris, Xanthomonas campestris (pv. campestris), Xanthomonas campestris campestris, Xanthomonas campestris pv. campestris
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