STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CAP51828.1annotation not available (460 aa)    
Predicted Functional Partners:
CAP51829.1
annotation not available
       0.847
CAP49937.1
annotation not available
 
     0.738
CAP51033.1
annotation not available
  
     0.678
ptlE
Type IV secretion system, component VirB8
  
     0.654
CAP53612.1
Rhs family protein
  
   
 0.652
XCC3567
Uncharacterized protein conserved in bacteria
  
     0.629
CAP51830.1
Transposase and inactivated derivatives
       0.629
XCC3036
Outer membrane receptor proteins mostly Fe transport
  
     0.615
ptlF
VirB9 protein; Type IV secretory pathway, VirB9 components
  
     0.595
virB6_2
VirB6-like membrane protein; Type IV secretory pathway, VirB6 components
  
     0.593
Your Current Organism:
Xanthomonas campestris campestris
NCBI taxonomy Id: 340
Other names: X. campestris pv. campestris, Xanthomonas campestris, Xanthomonas campestris (pv. campestris), Xanthomonas campestris campestris, Xanthomonas campestris pv. campestris
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