STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
siaE1Sialic acid-specific 9-O-acetylesterase; Beta-galactosidase/beta-glucuronidase (637 aa)    
Predicted Functional Partners:
XCC1754
Uncharacterized protein; Beta-galactosidase
 
  
 0.929
aglA2
Alpha-xylosidase; Alpha-glucosidases, family 31 of glycosyl hydrolases; Belongs to the glycosyl hydrolase 31 family
 
   
 0.773
XCC1756
Uncharacterized protein
 
   
 0.619
XCC1752
Cellulase; Uncharacterized protein related to plant photosystem II stability/assembly factor
       0.598
aguA
Xylan alpha-1,2-glucuronidase; Alpha-glucuronidase; Belongs to the glycosyl hydrolase 67 family
 
   
 0.571
xylA1
Xylose isomerase; Belongs to the xylose isomerase family
 
   
 0.549
xynA2
Beta-xylanase; Endohydrolyzes 1,4-beta-D-xylans
 
   
 0.545
XCC1750
Outer membrane receptor for monomeric catechols
 
     0.538
pel4
Pectate lyase E; Degradation of external pectate
  
     0.525
xylB1
Glycerol kinase
 
   
 0.492
Your Current Organism:
Xanthomonas campestris campestris
NCBI taxonomy Id: 340
Other names: X. campestris pv. campestris, Xanthomonas campestris, Xanthomonas campestris (pv. campestris), Xanthomonas campestris campestris, Xanthomonas campestris pv. campestris
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