STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dgoA4-hydroxy-2-oxoglutarate aldolase/2-deydro-3-deoxyphosphogluconate aldolase; 2-keto-3-deoxy-6-phosphogluconate aldolase (223 aa)    
Predicted Functional Partners:
dgoK
2-keto-3-deoxy-galactonokinase
 
 
 0.997
dgoD
D-galactonate dehydratase; Catalyzes the dehydration of D-galactonate to 2-keto-3- deoxy-D-galactonate
 
   
 0.967
XCC1745
Regucalcin; Gluconolactonase
 
     0.925
eda
KDPG and KHG aldolase; 2-keto-3-deoxy-6-phosphogluconate aldolase
  
  
0.860
rspA
Starvation sensing protein; Enolase; Belongs to the mandelate racemase/muconate lactonizing enzyme family
 
   
 0.725
kdgK
Sugar kinases, ribokinase family
 
  
 0.633
uxuB
Mannitol-1-phosphate/altronate dehydrogenases
 
   
 0.490
edd
Dihydroxyacid dehydratase/phosphogluconate dehydratase; Belongs to the IlvD/Edd family
 
  
 0.467
fdx
Ferredoxin; Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions
       0.458
garD
Altronate dehydratase
 
   
 0.447
Your Current Organism:
Xanthomonas campestris campestris
NCBI taxonomy Id: 340
Other names: X. campestris pv. campestris, Xanthomonas campestris, Xanthomonas campestris (pv. campestris), Xanthomonas campestris campestris, Xanthomonas campestris pv. campestris
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