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nlpD protein (Xanthomonas campestris campestris) - STRING interaction network
"nlpD" - Lipoprotein in Xanthomonas campestris campestris
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nlpDLipoprotein; Membrane proteins related to metalloendopeptidases (255 aa)    
Predicted Functional Partners:
surE
5’-nucleotidase SurE; Nucleotidase that shows phosphatase activity on nucleoside 5’-monophosphates; Belongs to the SurE nucleotidase family (259 aa)
   
  0.979
XCC1707
Protein-L-isoaspartate O-methyltransferase; Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and/or degradation of damaged proteins (225 aa)
       
  0.970
XCC1708
Predicted membrane protein (204 aa)
              0.893
lytM
Membrane proteins related to metalloendopeptidases (243 aa)
 
   
  0.861
XCC2299
N-acetylmuramoyl-L-alanine amidase (557 aa)
 
     
  0.832
amiC2
N-acetylmuramoyl-L-alanine amidase (386 aa)
 
     
  0.817
rlpA
Endolytic peptidoglycan transglycosylase RlpA; Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides (448 aa)
 
 
  0.797
XCC2858
Membrane proteins related to metalloendopeptidases (340 aa)
 
   
  0.760
XCC1705
Uncharacterized protein conserved in bacteria (181 aa)
              0.715
XCC0573
annotation not available (632 aa)
   
   
  0.659
Your Current Organism:
Xanthomonas campestris campestris
NCBI taxonomy Id: 340
Other names: X. campestris pv. campestris, Xanthomonas campestris, Xanthomonas campestris (pv. campestris), Xanthomonas campestris campestris, Xanthomonas campestris pv. campestris
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