STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XCC1685MFS transporter; Permeases of the major facilitator superfamily (468 aa)    
Predicted Functional Partners:
benE
Benzoate transporter; Uncharacterized protein involved in benzoate metabolism
      
 0.701
XCC4168
annotation not available
      
 0.700
XCC4171
Predicted membrane protein
      
 0.700
pobA
2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
 
 
  
 0.607
oprN5
Outer membrane protein
      
 0.588
pmrB
Multidrug resistance membrane translocase; Permeases of the major facilitator superfamily
      
 0.586
pheC
Cyclohexadienyl dehydratase; ABC-type amino acid transport/signal transduction systems periplasmic component/domain
  
  
 0.524
XCC0507
Ice nucleation protein; Uncharacterized protein conserved in bacteria
  
     0.414
pcaB
3-carboxy-cis,cis-muconate cycloisomerase; Adenylosuccinate lyase
  
   
 0.411
Your Current Organism:
Xanthomonas campestris campestris
NCBI taxonomy Id: 340
Other names: X. campestris pv. campestris, Xanthomonas campestris, Xanthomonas campestris (pv. campestris), Xanthomonas campestris campestris, Xanthomonas campestris pv. campestris
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