STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nucADNA/RNA endonuclease G NUC1 (245 aa)    
Predicted Functional Partners:
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Adenosine deaminase
   
  
 0.673
XCC0521
Ribonuclease; Endonuclease I
 
  
 0.636
XCC0240
annotation not available
  
   0.624
XCC1138
annotation not available
  
     0.604
fdhD
Sulfur carrier protein FdhD; Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH
      
 0.590
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
    
 
 0.574
CAP51726.1
Exported endopeptidase
  
     0.562
rnz
Uncharacterized protein; Metal-dependent hydrolases of the beta-lactamase superfamily III
   
 
 0.534
XCC2412
Oxidoreductase; Uncharacterized NAD(FAD)-dependent dehydrogenases
    
 
 0.525
fadH
NADH:flavin oxidoreductases Old Yellow Enzyme family
    
 
 0.525
Your Current Organism:
Xanthomonas campestris campestris
NCBI taxonomy Id: 340
Other names: X. campestris pv. campestris, Xanthomonas campestris, Xanthomonas campestris (pv. campestris), Xanthomonas campestris campestris, Xanthomonas campestris pv. campestris
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