STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CAP52024.1Integrase (192 aa)    
Predicted Functional Partners:
CAP52025.1
Integrase
 
   
0.888
CAP52023.1
annotation not available
       0.707
CAP52000.1
Phage-related minor tail protein
  
     0.637
CAP52472.1
Type V secretory pathway, adhesin AidA
  
     0.635
CAP51980.1
annotation not available
 
  
 0.576
repA
Uncharacterized protein conserved in bacteria
 
  
 0.570
XCC0502
annotation not available
  
     0.532
CAP51045.1
annotation not available
  
     0.516
XCC0456
Opacity protein and related surface antigens
  
     0.508
xcsL
Type II secretory pathway component PulL
  
     0.489
Your Current Organism:
Xanthomonas campestris campestris
NCBI taxonomy Id: 340
Other names: X. campestris pv. campestris, Xanthomonas campestris, Xanthomonas campestris (pv. campestris), Xanthomonas campestris campestris, Xanthomonas campestris pv. campestris
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