STRINGSTRING
CAP52025.1 protein (Xanthomonas campestris campestris) - STRING interaction network
"CAP52025.1" - Integrase in Xanthomonas campestris campestris
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CAP52025.1Integrase (489 aa)    
Predicted Functional Partners:
CAP52024.1
Integrase (192 aa)
 
     
0.888
CAP52023.1
annotation not available (322 aa)
              0.707
XCC1012
Uncharacterized protein (388 aa)
   
          0.700
CAP51045.1
annotation not available (275 aa)
   
          0.687
XCC0502
annotation not available (147 aa)
   
          0.682
XCC0573
annotation not available (632 aa)
   
     
  0.652
XCC2467
Uncharacterized protein; Glycogen debranching enzyme (773 aa)
   
          0.639
XCC0300
annotation not available (225 aa)
   
          0.637
XCC3477
Uncharacterized protein; Cytochrome c, mono- and diheme variants (239 aa)
   
          0.617
XCC1138
annotation not available (351 aa)
   
          0.605
Your Current Organism:
Xanthomonas campestris campestris
NCBI taxonomy Id: 340
Other names: X. campestris pv. campestris, Xanthomonas campestris, Xanthomonas campestris (pv. campestris), Xanthomonas campestris campestris, Xanthomonas campestris pv. campestris
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