STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CAP52025.1Integrase (489 aa)    
Predicted Functional Partners:
CAP52024.1
Integrase
 
   
0.888
CAP52023.1
annotation not available
       0.707
XCC1012
Uncharacterized protein
  
     0.700
CAP51045.1
annotation not available
  
     0.687
XCC0502
annotation not available
  
     0.682
XCC0573
annotation not available
  
   
 0.652
XCC2467
Uncharacterized protein; Glycogen debranching enzyme
  
     0.639
XCC0300
annotation not available
  
     0.637
XCC3477
Uncharacterized protein; Cytochrome c, mono- and diheme variants
  
     0.617
XCC1138
annotation not available
  
     0.605
Your Current Organism:
Xanthomonas campestris campestris
NCBI taxonomy Id: 340
Other names: X. campestris pv. campestris, Xanthomonas campestris, Xanthomonas campestris (pv. campestris), Xanthomonas campestris campestris, Xanthomonas campestris pv. campestris
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