STRINGSTRING
sdeB protein (Xanthomonas campestris campestris) - STRING interaction network
"sdeB" - Atrazine chlorohydrolase in Xanthomonas campestris campestris
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
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[Homology]
Score
sdeBAtrazine chlorohydrolase; Cytosine deaminase and related metal-dependent hydrolases (456 aa)    
Predicted Functional Partners:
hutC
Histidine utilization repressor; Transcriptional regulators (271 aa)
   
  0.993
hutI
Imidazolonepropionase and related amidohydrolases; Belongs to the metallo-dependent hydrolases superfamily. HutI family (428 aa)
 
     
  0.957
hutG
Formylglutamate amidohydrolase; Unnamed protein product (280 aa)
 
     
  0.957
hutH
Histidine ammonia-lyase; Unnamed protein product; Belongs to the PAL/histidase family (513 aa)
 
   
  0.946
hutU
Urocanate hydratase; Catalyzes the conversion of urocanate to 4-imidazolone- 5-propionate (560 aa)
 
   
  0.940
XCC2780
annotation not available (189 aa)
 
        0.655
amaB
N-carbamyl-L-amino acid amidohydrolase; Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases (423 aa)
   
  0.618
phaD
PhaD protein; Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter MnhD subunit (519 aa)
           
  0.432
Your Current Organism:
Xanthomonas campestris campestris
NCBI taxonomy Id: 340
Other names: X. campestris pv. campestris, Xanthomonas campestris, Xanthomonas campestris (pv. campestris), Xanthomonas campestris campestris, Xanthomonas campestris pv. campestris
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