STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yadFCarbonic anhydrase; Reversible hydration of carbon dioxide (220 aa)    
Predicted Functional Partners:
cah1
Carbonic anhydrase; Reversible hydration of carbon dioxide
  
  
 
0.833
cah2
Carbonic anhydrase; Reversible hydration of carbon dioxide
  
  
 
0.833
ecaA
Carbonic anhydrase
     
 0.829
asnS
Asparagine--tRNA ligase; Aspartyl/asparaginyl-tRNA synthetases
       0.726
XCC1559
annotation not available
       0.726
paiB
Transcriptional regulator
       0.726
nbaC
3-hydroxyanthranilate 3,4-dioxygenase; Catalyzes the oxidative ring opening of 3- hydroxyanthranilate to 2-amino-3-carboxymuconate semialdehyde, which spontaneously cyclizes to quinolinate
       0.707
ychM
Sulfate permease and related transporters (MFS superfamily)
 
 
 0.682
XCC1558
Uncharacterized protein
       0.668
XCC1554
Predicted membrane protein
       0.622
Your Current Organism:
Xanthomonas campestris campestris
NCBI taxonomy Id: 340
Other names: X. campestris pv. campestris, Xanthomonas campestris, Xanthomonas campestris (pv. campestris), Xanthomonas campestris campestris, Xanthomonas campestris pv. campestris
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