STRINGSTRING
yadF protein (Xanthomonas campestris campestris) - STRING interaction network
"yadF" - Carbonic anhydrase in Xanthomonas campestris campestris
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yadFCarbonic anhydrase; Reversible hydration of carbon dioxide (220 aa)    
Predicted Functional Partners:
cah2
Carbonic anhydrase; Reversible hydration of carbon dioxide (227 aa)
   
   
 
0.833
cah1
Carbonic anhydrase; Reversible hydration of carbon dioxide (226 aa)
   
   
 
0.833
ecaA
Carbonic anhydrase (275 aa)
         
  0.829
paiB
Transcriptional regulator (212 aa)
              0.726
XCC1559
annotation not available (101 aa)
              0.726
asnS
Asparagine--tRNA ligase; Aspartyl/asparaginyl-tRNA synthetases (464 aa)
              0.726
nbaC
3-hydroxyanthranilate 3,4-dioxygenase; Catalyzes the oxidative ring opening of 3- hydroxyanthranilate to 2-amino-3-carboxymuconate semialdehyde, which spontaneously cyclizes to quinolinate (176 aa)
              0.707
ychM
Sulfate permease and related transporters (MFS superfamily) (519 aa)
 
 
  0.682
XCC1558
Uncharacterized protein (111 aa)
              0.668
XCC1554
Predicted membrane protein (731 aa)
              0.622
Your Current Organism:
Xanthomonas campestris campestris
NCBI taxonomy Id: 340
Other names: X. campestris pv. campestris, Xanthomonas campestris, Xanthomonas campestris (pv. campestris), Xanthomonas campestris campestris, Xanthomonas campestris pv. campestris
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