STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
slyXProtein SlyX homolog; Belongs to the SlyX family (78 aa)    
Predicted Functional Partners:
XCC1505
Uncharacterized protein conserved in bacteria
 
     0.932
ugd
Predicted UDP-glucose 6-dehydrogenase; Belongs to the UDP-glucose/GDP-mannose dehydrogenase family
       0.898
fkpA1
FKBP-type peptidyl-prolyl cis-trans isomerases 1
     
 0.795
XCC1501
Glutathione peroxidase; Unnamed protein product; Belongs to the glutathione peroxidase family
       0.648
XCC1498
annotation not available
 
     0.556
nodI
ABC transporter ATP-binding protein; ABC-type multidrug transport system ATPase component
 
     0.501
XCC2656
annotation not available
  
     0.474
XCC0193
annotation not available
  
     0.470
XCC3763
annotation not available
  
     0.460
XCC0936
annotation not available
  
     0.441
Your Current Organism:
Xanthomonas campestris campestris
NCBI taxonomy Id: 340
Other names: X. campestris pv. campestris, Xanthomonas campestris, Xanthomonas campestris (pv. campestris), Xanthomonas campestris campestris, Xanthomonas campestris pv. campestris
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