STRINGSTRING
XCC1500 protein (Xanthomonas campestris campestris) - STRING interaction network
"XCC1500" - Predicted transcriptional regulators in Xanthomonas campestris campestris
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XCC1500Predicted transcriptional regulators (120 aa)    
Predicted Functional Partners:
nodI
ABC transporter ATP-binding protein; ABC-type multidrug transport system ATPase component (291 aa)
 
     
  0.959
XCC1498
annotation not available (328 aa)
 
          0.927
CAP52133.1
annotation not available (82 aa)
              0.849
XCC1497
annotation not available (274 aa)
              0.846
XCC1496
annotation not available (177 aa)
              0.761
XCC1501
Glutathione peroxidase; Unnamed protein product; Belongs to the glutathione peroxidase family (185 aa)
              0.590
XCC1495
annotation not available (149 aa)
              0.556
CAP49942.1
Predicted transcriptional regulators (402 aa)
           
  0.435
XCC1505
Uncharacterized protein conserved in bacteria (231 aa)
 
          0.430
Your Current Organism:
Xanthomonas campestris campestris
NCBI taxonomy Id: 340
Other names: X. campestris pv. campestris, Xanthomonas campestris, Xanthomonas campestris (pv. campestris), Xanthomonas campestris campestris, Xanthomonas campestris pv. campestris
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