STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XCC1465Subtilisin-like serine proteases (819 aa)    
Predicted Functional Partners:
XCC0677
annotation not available
  
     0.657
dctP
TRAP-type C4-dicarboxylate transport system,periplasmic component
      
 0.589
pme2
Pectinesterase; Pectin methylesterase
  
 
   0.531
XCC1663
Subtilisin-like serine proteases
  
     0.490
parD
Plasmid stabilization protein; Involved in plasmid partition
  
     0.483
XCC1684
ABC transporter ATP-binding protein; ABC-type multidrug transport system ATPase and permease components
 
 
   0.457
XCC2562
Uncharacterized membrane protein (homolog of Drosophila rhomboid)
  
    0.453
avrBs2
Avirulence protein; Glycerophosphoryl diester phosphodiesterase,probable
  
    0.444
XCC2595
annotation not available
  
 
   0.439
XCC4186
Leucine-rich repeat (LRR) protein
 
 
 
 0.439
Your Current Organism:
Xanthomonas campestris campestris
NCBI taxonomy Id: 340
Other names: X. campestris pv. campestris, Xanthomonas campestris, Xanthomonas campestris (pv. campestris), Xanthomonas campestris campestris, Xanthomonas campestris pv. campestris
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