STRINGSTRING
CAP52188.1 protein (Xanthomonas campestris campestris) - STRING interaction network
"CAP52188.1" - N-acetylmuramoyl-L-alanine amidase in Xanthomonas campestris campestris
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CAP52188.1N-acetylmuramoyl-L-alanine amidase (528 aa)    
Predicted Functional Partners:
CAP51726.1
Exported endopeptidase (283 aa)
   
          0.641
CAP53612.1
Rhs family protein (1850 aa)
 
          0.591
XCC0131
annotation not available (223 aa)
   
          0.579
CAP52189.1
Predicted transcriptional regulators (80 aa)
 
          0.575
XCC0449
Lytic enzyme; RTX toxins and related Ca2+-binding proteins (576 aa)
 
     
  0.524
XCC2631
annotation not available (266 aa)
   
          0.507
XCC3603
Uncharacterized protein conserved in bacteria (286 aa)
   
          0.503
CAP51828.1
annotation not available (460 aa)
   
          0.501
XCC3077
annotation not available (290 aa)
   
          0.493
rfaY
Probable RNA polymerase sigma factor RfaY; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is involved in lipopolysaccharide biosynthesis and pathogenicity (400 aa)
 
     
  0.461
Your Current Organism:
Xanthomonas campestris campestris
NCBI taxonomy Id: 340
Other names: X. campestris pv. campestris, Xanthomonas campestris, Xanthomonas campestris (pv. campestris), Xanthomonas campestris campestris, Xanthomonas campestris pv. campestris
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